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Installed software modules on the HPC cluster 'Elwetritsch'

Modul NameVersionsDescription
abaqus2016
2017
latest
Abaqus FEA Product Suite [Restricted Access]
anaconda24.2.0
4.3.1
5.0.1
latest
Anaconda (Python distribution for large-scale data processing, predictive analytics, and scientific computing)
anaconda34.2.0
4.3.1
5.0.1
latest
Anaconda (Python distribution for large-scale data processing, predictive analytics, and scientific computing)
ansoft17.0
17.1
17.2
18.0
18.1
18.2
latest
Ansoft Product Portfolio (AnsysEM) [Restricted Access]
ansys17.0
17.1
17.2
18.0
18.1
18.2
latest
ANSYS Product Portfolio (CFD, CFX, Fluent, Gambit) [Restricted Access]
binutils2.26
2.27
latest
GNU Binutils (collection of binary tools)
blas2011-04-19
latest
BLAS (Basic Linear Algebra Subprograms)
blast2.2.26
2.2.31+
2.3.0+
2.6.0+
latest
NCBI Blast (Basic Local Alignment Search Tool)
blenderlatest Blender (3D content creation suite)
boost1.61
1.62
1.63
latest
boost (C++ source libraries)
bowtie1.1
latest
Bowtie (ultrafast, memory-efficient short read aligner)
bowtie22.2
latest
SOFA (Statistics Open For All)
caffe1.0-rc3
latest
Caffe (deep learning framework developed with cleanliness, readability, and speed in mind)
cblas2011-01-20
latest
CBLAS (C Interface for the Basic Linear Algebra Subprograms)
cgns3.3.0
latest
cgnslib (CFD General Notation System)
cmake3.5
3.6
3.7
latest
cmake (Cross Platform Make)
codeblockslatest Code::Blocks (The open source, cross platform, free C++ IDE)
comsol4.3a
5.2a
5.3
latest
COMSOL (COMSOL Multiphysics)
cst2016
2017
latest
CST Studio Suite 2017 [Restricted Access]
cudnn6.5
6.5-v2
7.0-v4
7.5-v5
8.0-v7.0
latest
cuDNN (GPU-accelerated library of primitives for deep neural networks)
cutadaptlatest cutadapt (trim adapters from high-throughput sequencing reads)
eclipselatest Eclipse IDE for Java EE Developers
edem2017
2.7
latest
EDEM (CAE with state-of-the-art Discrete Element Modeling technology) [Restricted Access]
embree2
latest
Embree (collection of high-performance ray tracing kernels)
fasta36
latest
FASTA (Sequence Comparisons)
fastx_toolkit0.0.14
latest
FASTX-Toolkit (collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing)
ffmpeg3.2
3.3
latest
FFmpeg (Multimedia Framework)
gaussiang09-D.01
g16-A.03
latest
Gaussian (electronic structure modeling) [Restricted Access]
gcc4.9
5.1
5.2
5.3
5.4
6.1
6.2
6.3
7.1
latest
GCC (The GNU Compiler Collection)
gitlatest Git (distributed version control system )
gnuplot5.0
latest
GNU Plot (simple program for displaying phylogenies)
gromacs2016
5.0
5.1
latest
GROMACS (Groningen Machine for Chemical Simulations)
gsl1.16
latest
GNU Scientific Library
gurobi7.0
latest
Gurobi (State-of-the-Art Löser für mathematische Programme)
hdf51.10
1.8
latest
HDF5 (data model, library, and file format for storing and managing data)
hmmer2.3
3.1
latest
HMMER (biosequence analysis using profile hidden Markov models)
hpx0.9
latest
HPX (High Performance ParalleX)
hyperworks2017
latest
Altair HyperWorks CAE Plattform
intel2015
2016
2017
2018
latest
Intel Compiler and Library Suite
intellij-idealatest IntelliJ IDEA (Java IDE - Community Edition)
interproscan5
latest
InterProScan (database which integrates together predictive information about proteins' function from a number of partner resources)
ispc1.9
latest
ISPC (compiler for a variant of the C programming language)
jaguc2.1
2.1a
2.2-dummy-db
3.0
latest
JAguc (software for identifying large samples of RNA data efficiently)
jansson2.5
2.6
latest
Jansson (C library for encoding, decoding and manipulating JSON data)
jdk1.6
1.7
1.8
9
latest
Java SDK
lammps2016-02-16
2016-05-14
2017-01-09
latest
LAMMPS (Molecular Dynamics Simulator)
liggghts3.6ERROR:105: Unable to locate a modulefile for 'liggghts/latest'
lumerical-fdtd8
latest
Lumerical FDTD Solutions (High performance FDTD-method Maxwell solver) [Restricted Access]
mafft7
latest
MAFFT (Multiple alignment program for amino acid or nucleotide sequences)
maple2016
2017
latest
Maple (Technical Computing Software for Engineers)
mathematica10
11
latest
Mathematica
matlablatest
R2016a
R2016b
R2017a
R2017b
Matlab
maxwell3
4
latest
Maxwell Render
metis5.1
latest
METIS (Serial Graph Partitioning and Fill-reducing Matrix Ordering)
muscle3.8
latest
Muscle (Multiple sequence alignment)
namd2.12-ibverbs
2.12-ibverbs-smp
2.12-ibverbs-smp-cuda
latest
NAMD (Molecular Dynamics Software)
netbeanslatest Netbeans Java IDE
nvidia7.5
8.0
latest
NVIDIA CUDA SDK (CUDA Toolkit, GPU Programming SDK)
octave4.0
4.2
latest
GNU Octave (high-level interpreted language for numerical computations)
openblas0.2.20
0.2.6
latest
OpenBLAS (optimized BLAS library based on GotoBLAS2 1.13 BSD)
opencv2.4
3.1
latest
OpenCV (a library of programming functions for real time computer vision)
opendx4.4
latest
OpenDX (Make your data come to life!)
openfoam2.3.1
2.4.0
3.0.1
4.0
4.1
latest
v1612+
v1706
OpenFOAM (Open Source Computational Fluid Dynamics) Extended Version
openmpi1.10
1.10-intel-2016
1.10-intel-2017
1.6
1.6-intel-2016
1.8
1.8-intel-2016
2.0
2.0-intel-2016
2.0-intel-2017
2.1
2.1-intel-2016
2.1-intel-2017
3.0
3.0-intel-2017
3.0-intel-2018
latest
OpenMPI (open source MPI-2 implementation)
orca4.0
latest
ORCA (An ab initio, DFT and semiempirical SCF-MO package)
ovito2.8
latest
Ovito (scientific visualization and analysis software for atomistic simulation data )
paraview4.3
4.4
5.1
5.2
latest
ParaView (data analysis and visualization application)
pgi15.4
16.4
latest
PGI Cluster Development Kit (Parallel Fortran, C and C++ Compilers & Tools)
platform-mpi9.1.2-CE
9.1.4
latest
Platform MPI
powerflowlatest PowerFLOW
python2.7
3.5
3.6
latest
Python Programming Language
qiime1.8.0
latest
Qiime (Quantitative Insights Into Microbial Ecology)
qt5.4
5.5
5.6
5.7
5.8
5.9
latest
Qt (cross-platform application and UI framework)
qtcreatorlatest Qt Creator (cross-platform application and UI framework)
R3.2
3.3
latest
R (programming language and software environment for statistical computing and graphics)
raxml7.3
8.2
latest
RAxML (Randomized Axelerated Maximum Likelihood)
realflow2015
latest
RealFlow
rnammer1.2
latest
RNAmmer (consistent and rapid annotation of ribosomal RNA genes)
rsem1.2
latest
RSEM (RNA-Seq by Expectation-Maximization)
rstudio1.0
latest
RStudio IDE (free and open source integrated development environment for R)
samtools1.3
latest
SAM Tools (Sequence Alignment/Map Tools)
scilablatest Scilab (software for numerical computation)
score-p3.0
latest
Score-P (Scalable Performance Measurement Infrastructure for Parallel Codes)
seafile5.1.2
6.0.2
6.0.4
6.0.6
latest
Seafile (Cloud storage with client-side Encryption)
signalp4.1
latest
SignalP (discriminating signal peptides from transmembrane regions)
smpiERROR:105: Unable to locate a modulefile for 'smpi/latest'
sofa1.4
latest
SOFA (Statistics Open For All)
spades3.9
latest
SPAdes (simple program for displaying phylogenies)
spsslatest SPSS (IBM SPSS Predictive Analytics)
star-ccm+11
latest
Star-CCM+ (engineering physics simulation)
subversionlatest Subversion (open source version control system)
symphony5.6
latest
Symphony (solver for mixed-integer linear programs - MILPs)
tecplotlatest Tecplot (Master the View)
texlivelatest TeX Live (TeX document production system)
tmhmm2.0
latest
TMHMM (predicts transmembrane helices in proteins)
tophat2.1
latest
TopHat (fast splice junction mapper for RNA-Seq reads)
totalviewlatest TotalView (sophisticated and powerful tool used for debugging and analyzing both serial and parallel programs)
transdecoder3.0
latest
TransDecoder (Find Coding Regions Within Transcripts)
trinityrnaseq2.0
2.2
2.3
2.4
latest
Trinity RNA Seq (PAired-eND Assembler for DNA sequences)
trinotate3.0
latest
Trinotate (Find Coding Regions Within Transcripts)
vampirlatest Vampir (Visualization and Analysis of Parallel Applications)
vmd1.9
latest
VMD (molecular visualization program)
vtk7.0
latest
VTK (The Visualization Toolkit)

Additional software can be installed on request.